Upgrading the BGSU RNA website

• Many changes and new services are available but still experimental, such as the circular diagram server (accessed from the structure atlas page for each structure), the R3DSVS sequence variability server, and other new services on the API page.
• We are setting up the pipeline and web server on a new server.  We will test everything we can, but some things will break.
• Old services such as R3D-2-MSA and R3D Align will no longer work.
  

Progress in 2020:

• Weekly updates are running smoothly, processing new RNA-containing 3D structures in mmCIF format.
  
• WebFR3D has a new "unified search" that can be run on individual structures or a representative set of structures.  It is faster than the older WebFR3D pages and works more reliably.
• The standalone Matlab version of R3D Align is updated and available on GitHub.
• JAR3D is working on release 3.2 of the RNA 3D Motif Atlas.
  

Known issues as of February 2020:

• The RNA 3D Motif Atlas has not been updated in several years
• Structure Atlas pages do not display hairpin, internal, or 3-way junction loop motifs
• Web R3D Align is not working
• We don't post very often on Twitter!
  

Follow RNA 3D Hub on Twitter.