News

Aug 1, 2017 4:46 PM Equivalence classes organized by Integrated Functional Elements (IFEs)
Today we release our first newsletter describing our main projects. We will also distribute it at the RNA Society meeting in Ann Arbor.

Jul 1, 2017 3:00 PM FR3D annotations of RNA basepairs updated
The paper describing the Rutgers-BGSU collaboration to update NDB has been published.

Oct 1, 2016 4:06 PM mmCIF files incorporated into representative sets
Today we release our first newsletter describing our main projects. We will also distribute it at the RNA Society meeting in Ann Arbor.

Sep 1, 2016 6:46 PM mmCIF files being annotated on our site and NDB
Today we release our first newsletter describing our main projects. We will also distribute it at the RNA Society meeting in Ann Arbor.

Feb 13, 2015 5:57 PM Upgrading the BGSU RNA website
Following the recent switch to mmCIF as the main format for 3D structural data distribution, we are upgrading RNA 3D Hub to take advantage of the new data. While this work is in progress, we paused the automatic updates while keeping all previous releases and annotations available.

Oct 1, 2014 4:56 PM FR3D Works on Octave
The motif search tool FR3D has been revised to work better with Octave, which runs Matlab code in much the same way that Matlab does.

Oct 1, 2014 4:55 PM RNA 3D Structure Course Published Online
Prof. Zirbel taught a workshop course on RNA 3D structure while on sabbatical visiting Ivo Hofacker’s group at the University of Vienna. The contents of the course are available online at this link. It introduces the RNA nucleotides, RNA basepairs including non-Watson-Crick basepairs, RNA base stacking, base-phosphate interactions, anti and syn conformation of the backbone, RNA motifs, sequence variability in RNA motifs, and the rudiments of motif searching using FR3D.

Oct 1, 2014 4:55 PM The Nucleic Acid Batabase: New Features and Capabilities
The paper describing the Rutgers-BGSU collaboration to update NDB has been published.

Sep 23, 2013 4:53 PM RNA 3D Motif Atlas Paper has been Published
The paper describing the RNA 3D Motif Atlas has been published in RNA.

May 29, 2013 4:52 PM R3D Align Paper is Available Online
The final version of our new paper describing R3D Align webserver has been published by Nucleic Acids Research. The paper appeared in the NAR Web Server Issue in June 2013.

Oct 20, 2012 4:51 PM Introduction to RNA 3D Hub
Take a look at the RNA 3D Hub demo presented by Anton Petrov at the Rustbelt RNA Meeting on October 20, 2012.

Oct 16, 2012 4:51 PM BGSU RNA Team in the News
A news article about BGSU RNA team was featured on BGSU website.

Oct 14, 2012 4:50 PM WebFR3D Update
This week we are rolling out an update to WebFR3D, which includes several enhancements.

Sep 18, 2012 4:49 PM New Features in RNA 3D Hub (September 2012)
This week we are introducing RNA Structure Atlas, which provides a new way of browsing the RNA 3D Hub by PDB.

Aug 23, 2012 4:47 PM New Features in RNA 3D Hub (August 2012)
RNA 3D Hub has been updated with new functionality making it easier to explore the RNA 3D Motif Atlas and the Loop Atlas.