Web Applications

We have developed several web applications for analyzing, searching, and aligning RNA 3D structures:

• WebFR3D - server to search for instances of RNA motifs across many 3D structures
• JAR3D - server to map RNA hairpin or internal loop sequences to known RNA motif groups
• R3DMCS - server to explore the variability of an RNA motif across the same molecule from the same organism, or across different organisms.
• R3DSVS - server to explore the sequence variability of an RNA motif across many different organisms.
• R3DAID - server to display and evaluate pairwise alignments between RNA chains.
• Circular Diagram Server - produces high-quality representations of the pairwise interactions in RNA or DNA structures, from small molecules up to entire ribosomes.