A personal note. When you rupture a spinal disk as I appear to have done, you begin to appreciate the role of analgesics or pain medication. You also realize that the items on our list are not very strong and you are greatful for the expanded list of pain relievers. Unfortunately, we can't provide you with samples of the "really good stuff" for ordinary laboratory tests.
last edited: October 11, 2000
file called HPLC_remarks.htm
This instrument has not been giving us good results
so it is time to do a little diagnostics.
Brief description of our system
If you inject an aqueous sample (or just a sample of water)
you see a characteristic signal.
This is small, but larger than baseline noise.
It looks like the derivative of a simple peak.
That is, it first rises (about 0.02 Absorbance Unit)
then drops below baseline by a comparable amount.
The first rise occurs about 1 minute after sample injection
and the full event lasts about 0.5 minutes.
This is due to the difference in the refractive index of the water compared to that of the 50% alcohol. It makes it difficult to measure chromatographic peaks with a retention time below 1.5 minutes, especially if the peak amplitude is in the 0.05 AU neighborhood. The effect can be greatly reduced by preparing samples using a methanol/water mixture comparable to that used as the mobile phase.
However, this solvent transient provides some useful information. It tells us that the dead time in the instrument is about one minute. That is, a sample remains in the column about 1 minute even if it is not retained at all by the stationary phase. It suggests that we will not be successful separating materials that have retention times of 1-2 minutes on this column. After all, the first minute represents no chromatography at all.
This t0 time can also be determined with a compound that has virtually no retention on the column. Uracil is a good candidate that also has a strong absorbance in the 250-275 nm region.
A more useful parameter is the capacity factor, k'
In retrospect, it looks like there was little retention of sample by the column.
What could be wrong? One possibility is that someone inadvertently changed the material in the fluid reservoirs on the instrument. We know that the methanol/water ratio should change the retention time (by perhaps a factor of five.) What would happen if both bottles were filled with methanol? This might shorten the retention time and attempts to change the polarity of the solvent would have no apparent effect.
it's probably easier to replace the fluids than to test them.
A more likely situation occurs when the column has seen a lot of use or abuse. Some materials of low polarity will be held by the C18 coating. Gradually, the column can become overloaded with such material and there's little available coating for normal chromatography. Usually one observes a slow deterioration of the column, with retention times slowly increasing. Most such components are slowly desorbed from the column by a prolonged cleaning cycle of pure methanol. However, some materials will remain permanently bound, ruining a column. (The symptom would be what we observe: that most materials show rapid peaks with nearly identical retention times.)
A similar problem occurs if the column has suffered internal mechanical damage. If the column developed a channel, we'd find that the sample would largely flow through the column through that channel. Since the sample did not come into intimate contact with the stationary phase, there was little opportunity for normal chromatographic processes to occur. Again, we'd see relatively short retention times.
Ideally, we would keep with the instrument a small folder of typical results of a test standard on a new column. We could then quickly run one of those test samples to see that the instrument and column were performing normally. We had such a folder for the HPLC but it is lost. It's time to prepare some new information to serve as such an instrument record.
A test sample used by Altec has five components.
It is run at 65% acetonitrile / 35% phosphate buffer (at pH 3.2)
This pH will protonate the carboxylic acid and ensure
consistent retention times for the amines. Approximate capacity factors are given.
A Guard Column is a very short column that is introduced between the sample chamber and the analytical column.
First, let us see that the column and instrument are working as expected. It might be useful if several earlier groups contribute to this final week's work, so you have some useful data and you see the proper bevavior of the instrument. I'd rather continue to have the class work another day on this project if it means we get some repectable results.